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Enter a gene, cCRE, variant or locus
  • Human
    • cCREs by Class
    • cCREs by Cell and Tissue Type
    • cCRE-Gene Links
    • Functional Characterization
  • Mouse
    • cCREs by Class
    • cCREs by Cell and Tissue Type
    • Functional Characterization
  • Other
    • Orthologous cCREs
Human (GRCh38/hg38)
Human (GRCh38/hg38)

2,348,854 cCREs • 1,888 cell types

All Human cCREs (129.1 MB)
cCREs by Class (.bed)

Promoter-like (PLS) (47,532)

2.6 MB

All Candidate Enhancers (pELS & dELS) (1,718,669)

94.4 MB

Proximal enhancer-like (pELS) (249,464)

13.7 MB

Distal enhancer-like (dELS) (1,469,205)

80.7 MB

Chromatin Accessible with CTCF (CA-CTCF) (126,034)

7.3 MB

Chromatin Accessible with H3K4me3 (CA-H3K4me3) (79,246)

4.8 MB

Chromatin Accessible with TF (CA-TF) (26,102)

1.5 MB

Chromatin Accessible Only (CA) (245,985)

13.0 MB

TF Only (TF) (105,286)

5.6 MB

CTCF-Bound cCREs (948,642)

63.0 MB

Silencer Sets (.tar.gz)

14.3 MB (unzipped)
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Search Candidate Regulatory Elements by ENCODE

Copyright © Weng Lab, Moore Lab 2025.

How to Cite the ENCODE Encyclopedia, the Registry of cCREs, and SCREEN:
"ENCODE Project Consortium, et al. Nature 2020."

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