Scheduled maintenance is in progress... Some features may be unavailable

SCREEN logo
Downloads
About
Help
Screen Helix

Search Candidate cis-Regulatory Elements

Search in:
Enter a gene, cCRE, variant, GWAS, or locus

Try these example searches to get started

Where to start?

Browse these example searches to get started with SCREEN. You can search for genes, cCREs, variants, a specific loci, or a study from the GWAS catalog. Change the assembly above to see different examples.

chr6:21,592,768-21,598,619

Gene: SOX4

chr19:50,417,519-50,417,853

cCRE: EH38E3314260

chr6:21,298,226-21,298,227

Variant: rs9466027

chr12:53380176-53416446

Region: chr12:53380176-53416446

Foss-Skiftesvik J

GWAS: Astrocytoma

chr19:44,905,754-44,909,393

Gene: APOE

Explore All Biosamples and GWAS

GWAS

Explore Genome-Wide Association Studies (GWAS).

Explore
Human

Visualize and explore human biosamples across diverse tissues and cell types from ENCODE.

Explore
Mouse

Visualize and explore Mouse biosamples across diverse tissues and cell types from ENCODE.

Explore

Access SCREEN Data Instantly!

Download comprehensive datasets of candidate cis-regulatory elements (cCREs) from ENCODE for in-depth analysis.

Available Downloads

✅ cCRE Annotations

✅ Data Matrices across multiple assays

✅ cCREs downloads by Genomic Region

Go to Downloads
📈 Trending Datasets
All Human cCREs

2,348,854 cCREs • 1,888 cell types

129.1 MB

Human Promoters

47,532 cCREs

2.6 MB

Human Enhancers

1,718,669 cCREs

94.4 MB

All Mouse cCREs

926,843 cCREs • 366 cell types

50.6 MB

Mouse Promotes

27,332 cCREs

1.5 MB

Mouse Enhancers

512,001 cCREs

28.2 MB

Logo

Search Candidate Regulatory Elements by ENCODE

Copyright © Weng Lab, Moore Lab 2025.

How to Cite the ENCODE Encyclopedia, the Registry of cCREs, and SCREEN:
"ENCODE Project Consortium, et al. Nature 2020."

About us
SCREENWeng LabMoore LabENCODE ConsortiumUMass Chan Medical School
Explore/Tools
PsychSCREENigSCREENFactorbook
Data
DownloadsVersion History
Help
API DocumentationCitationsContact Us/Feedback